PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1712
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 245aa    MW: 27185.5 Da    PI: 8.568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1712genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
      Gh_D13G1712 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding45.41.9e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
      Gh_D13G1712  67 RGNFTAHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.316965IPR017930Myb domain
SuperFamilySSF466891.41E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002493.6E-161461IPR001005SANT/Myb domain
CDDcd001677.44E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007176.0E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.29466116IPR017930Myb domain
PfamPF002491.1E-1267112IPR001005SANT/Myb domain
CDDcd001672.14E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TAHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLRKFQ  120
SAMEPPSMAG DEKSLDFAES ETGAGSSNLK LNQTSSSYAS STENISRLLQ GWMRSSPKIN  180
NNNNNNSDSI GSCSAAANCD LISHGDDQLE SILSFENMKD VALMEKSTSK ATFQDSGRCK  240
NSTCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.168660.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465520.11e-168PREDICTED: myb-related protein 306-like
SwissprotP813927e-86MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D2VHT31e-168A0A0D2VHT3_G
STRINGPOPTR_0013s06390.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.16e-99myb domain protein 60